Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002584.1_1824_2076_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1824 - 2076

Intron Length:

253

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTGAGTGCC

5'SS Class:

major

3'SS Sequence:

CCTCCCCACGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAC

U12 Branch Point Sequence:

TCCTCCCCACGC

Flanking Amino Acid:

SIIRGLLLQHEFSRFFRRRY

Intron Amino Acid Position:

306

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

1.3

69.3

35.8

Major BPS

49.9

-0

1.3

60.3

37.5

Major PPT

67.6

0.4

0.8

61.6

27.7

Minor 5ss

29.9

-2.3

3.1

35.2

33.9

Minor BPS

40.3

-0.7

2.2

50.84

46.1

Associated Gene:

Gene:

MCOLN1

Ensembl Gene ID:

ENSAPLG00000012338

Chromosome:

PEDO01002584.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018554

74 - 3581

3508

ENSAPLT00000018209

324 - 4073

3750

ENSAPLT00000046637

21 - 4581

4561

ENSAPLT00000012866

67 - 3984

3918

ENSAPLT00000037538

21 - 4741

4721

ENSAPLT00000035647

67 - 3984

3918