Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002584.1_2227_2342_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2227 - 2342

Intron Length:

116

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGGGG

5'SS Class:

major

3'SS Sequence:

TCTGTCCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

TCAGTTTCACCT

Flanking Amino Acid:

TIMKIGIESKNFAGYDVCSI

Intron Amino Acid Position:

356

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

60.1

42.1

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

80.2

0.68

0.8

73.8

31.3

Minor 5ss

27.2

-2.6

3.7

37.3

47.4

Minor BPS

-0.3

1.8

59.65

44.4

Associated Gene:

Gene:

MCOLN1

Ensembl Gene ID:

ENSAPLG00000012338

Chromosome:

PEDO01002584.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018554

74 - 3581

3508

ENSAPLT00000018209

324 - 4073

3750

ENSAPLT00000046637

21 - 4581

4561

ENSAPLT00000012866

67 - 3984

3918

ENSAPLT00000037538

21 - 4741

4721

ENSAPLT00000035647

67 - 3984

3918