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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002584.1_3329_3446_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3329 - 3446
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
CCCACCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
AGGGCTTCATCT
Flanking Amino Acid:
LITGSYETIKHQCEGEPPVS
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
69.3
0.44
0.8
61.4
28.9
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
45.5
-0.2
1.8
58.99
44.4

Associated Gene:

Gene:
MCOLN1
Ensembl Gene ID:
ENSAPLG00000012338
Chromosome:
PEDO01002584.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018554
74 - 3581
3508
ENSAPLT00000012866
67 - 3984
3918
ENSAPLT00000046637
21 - 4581
4561
ENSAPLT00000037538
21 - 4741
4721