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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002584.1_3578_3947_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3578 - 3947
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
CGTTCACCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TCCCAATTAACC
Flanking Amino Acid:
SSCSVFCCCERAPLQDNAML
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
62.7
43.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
69.8
0.45
0.9
62.6
33.4
Minor 5ss
34.7
-1.7
2.8
42
44.3
Minor BPS
51
0.01
1.8
62.11
42.8

Associated Gene:

Gene:
MCOLN1
Ensembl Gene ID:
ENSAPLG00000012338
Chromosome:
PEDO01002584.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035647
67 - 3984
3918
ENSAPLT00000012866
67 - 3984
3918
ENSAPLT00000037538
21 - 4741
4721