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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002584.1_543_723_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

543 - 723

Intron Length:

181

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTCTGGGGA

5'SS Class:

weak_major

3'SS Sequence:

AGCTGGACCGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CACGCAC

U12 Branch Point Sequence:

CGGAGCTGGACC

Flanking Amino Acid:

GRPGPLGPGEGYKNFTLKFH

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.8

0.14

1.4

47.6

Major BPS

-0.2

1.2

52.7

34.2

Major PPT

56.4

0.15

47.4

39.8

Minor 5ss

29.6

-2.3

3.3

29.4

43.3

Minor BPS

43.2

-0.5

1.9

47.74

Associated Gene:

Gene:

MCOLN1

Ensembl Gene ID:

ENSAPLG00000012338

Chromosome:

PEDO01002584.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031646

124 - 2486

2363

ENSAPLT00000018554

74 - 3581

3508