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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002584.1_754_1343_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
754 - 1343
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATCGC
5'SS Class:
major
3'SS Sequence:
TCCCCTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCCAG
U12 Branch Point Sequence:
GCCGTTCCAGCC
Flanking Amino Acid:
LQELHPQIPQAHQRHHPVQA
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
63.2
41.7
Major BPS
44.3
-0.3
1.8
58.2
48.3
Major PPT
71
0.47
0.7
69.3
24.6
Minor 5ss
35.6
-1.6
3
44.4
37.5
Minor BPS
34.7
-1.1
1.7
34.76
35.1

Associated Gene:

Gene:
MCOLN1
Ensembl Gene ID:
ENSAPLG00000012338
Chromosome:
PEDO01002584.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018554
74 - 3581
3508
ENSAPLT00000046637
21 - 4581
4561
ENSAPLT00000018209
324 - 4073
3750
ENSAPLT00000037538
21 - 4741
4721
ENSAPLT00000035647
67 - 3984
3918
ENSAPLT00000031646
124 - 2486
2363