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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002587.1_2183_3214_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2183 - 3214
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
CTCCCCGCGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCCTCTCCATCC
Flanking Amino Acid:
PAEQIVGISRIQRSAYAVAF
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
57.5
42.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
62
0.27
1
57.2
33.3
Minor 5ss
30.8
-2.2
3.3
32.5
42.6
Minor BPS
43.7
-0.4
2
54.69
43.7

Associated Gene:

Gene:
SYT12
Ensembl Gene ID:
ENSAPLG00000003157
Chromosome:
PEDO01002587.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003203
465 - 5677
5213