Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002681.1_923_996_R

Intron Information:

Intron Rank:

134807

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

923 - 996

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTCACTACA

5'SS Class:

weak_major

3'SS Sequence:

CATGCAGTTTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CACTCAT

U12 Branch Point Sequence:

CACTCATGCAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.9

0.21

1.5

62.5

43.9

Major BPS

74.8

0.62

0.9

75.3

29.7

Major PPT

48.2

-0.1

1.7

54.5

44.6

Minor 5ss

36.5

-1.5

2.5

40.3

Minor BPS

39.8

-0.7

2.3

54.77

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019861

Chromosome:

PEDO01002681.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018095

21 - 1179

1159