Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002692.1_2629_2829_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2629 - 2829

Intron Length:

201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGAACC

5'SS Class:

major

3'SS Sequence:

CCCACACCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCACAC

U12 Branch Point Sequence:

CCCCCCACACCC

Flanking Amino Acid:

AKGHPERVFSVTHIKTIKRE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

35.8

Major BPS

47.2

-0.1

52.2

32.7

Major PPT

0.27

0.9

29.5

Minor 5ss

29.8

-2.3

2.8

37.3

39.7

Minor BPS

40.1

-0.7

1.9

44.72

43.4

Associated Gene:

Gene:

SV2A

Ensembl Gene ID:

ENSAPLG00000004387

Chromosome:

PEDO01002692.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004500

1 - 3306

3306