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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002692.1_3191_3278_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3191 - 3278
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
CCCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAT
U12 Branch Point Sequence:
CCGGTCCCATCC
Flanking Amino Acid:
MAWAIIPHYGWSFQMGSAY
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
43
Major BPS
54.5
0.11
1.4
66.4
42.2
Major PPT
70.9
0.47
0.7
64.7
23.9
Minor 5ss
30
-2.3
3.5
39.7
45.8
Minor BPS
36.3
-1
1.9
37.89
40.7

Associated Gene:

Gene:
SV2A
Ensembl Gene ID:
ENSAPLG00000004387
Chromosome:
PEDO01002692.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004500
1 - 3306
3306