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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002695.1_3671_4560_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3671 - 4560
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
CCTCTCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTTAC
U12 Branch Point Sequence:
CACAGCTTACTG
Flanking Amino Acid:
KQPEAPKPNRILIDVVPTLP
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
57.6
0.19
1.1
49.1
37.7
Major PPT
77.2
0.61
0.7
68.6
31.7
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
42.1
-0.7
2
40.34
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012923
Chromosome:
PEDO01002695.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013482
955 - 6967
6013