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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002695.1_985_1532_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
985 - 1532
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
CTCTCTCTGAAG
Flanking Amino Acid:
ELPITVDILVETGVGKTVNG
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
67.9
0.4
1
67.7
32.7
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
46.5
-0.4
1.8
51.85
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012923
Chromosome:
PEDO01002695.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013482
955 - 6967
6013