Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002737.1_260_1039_R

Intron Information:

Intron Rank:

145104

Intron Class:

major

Intron Phase:

Intron Coordinates:

260 - 1039

Intron Length:

780

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

TGTGCCTTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGTTCAC

U12 Branch Point Sequence:

AGTGCGTTCACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.5

0.98

0.7

80.9

25.7

Major BPS

62.6

0.31

1.2

66.7

39.9

Major PPT

70.1

0.45

1.1

65.5

Minor 5ss

27.5

-2.6

33.8

42.3

Minor BPS

-0.3

2.5

61.1

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025487

Chromosome:

PEDO01002737.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041124

21 - 1528

1508

ENSAPLT00000030352

21 - 1528

1508