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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002754.1_1773_2131_F

Intron Information:

Intron Rank:
125084
Intron Class:
major
Intron Phase:
Intron Coordinates:
1773 - 2131
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAGC
5'SS Class:
major
3'SS Sequence:
CTTCTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
TTCTTCCCACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
81.5
0.71
0.7
76.2
26
Minor 5ss
32.7
-2
3.1
43.6
43.7
Minor BPS
40.6
-0.8
2.1
48.99
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017359
Chromosome:
PEDO01002754.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041295
21 - 2200
2180