Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002754.1_538_758_F

Intron Information:

Intron Rank:

125085

Intron Class:

major

Intron Phase:

Intron Coordinates:

538 - 758

Intron Length:

221

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGCAC

5'SS Class:

strong_major

3'SS Sequence:

CTTCCTCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAG

U12 Branch Point Sequence:

CTCCACTAAGCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

38.2

Major BPS

50.4

0.01

1.5

59.3

35.9

Major PPT

77.6

0.62

0.7

69.4

31.3

Minor 5ss

-2.2

3.3

45.6

Minor BPS

43.5

-0.5

52.46

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017359

Chromosome:

PEDO01002754.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041295

21 - 2200

2180