About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002774.1_10177_10570_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
10177 - 10570

Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GGG|GTGCGGGGG

5'SS Class:
major

3'SS Sequence:
CGCTGCCCCGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGAGGAA

U12 Branch Point Sequence:
AGGGTCCCAGCT

Flanking Amino Acid:
GTELRDAGGQGWLRQHESVE

Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
63.3
0.32
1.1
45.9
44.2

Major BPS
44.2
-0.3
1.4
37.5
42.1

Major PPT
65.4
0.35
0.9
57.7
33.3

Minor 5ss
21.7
-3.3
3.3
19.7
37.9

Minor BPS
39
-0.7
1.9
51.78
42.6

Associated Gene:

Gene:
ZMYND10

Ensembl Gene ID:

Chromosome:
PEDO01002774.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1800 - 10698
8899