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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002774.1_10916_11119_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10916 - 11119
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
CATTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GGCACCCCATTT
Flanking Amino Acid:
HSYDEICCKTGMSYKELDER
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.9
42.4
Major BPS
71.2
0.53
1
61
37.5
Major PPT
80.7
0.69
0.8
73.2
36.9
Minor 5ss
26.7
-2.7
2.9
25.7
36.9
Minor BPS
39.7
-0.7
1.9
51.54
42.6

Associated Gene:

Gene:
NPRL2
Ensembl Gene ID:
ENSAPLG00000015009
Chromosome:
PEDO01002774.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015634
10848 - 14570
3723