About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002774.1_2088_2284_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
2088 - 2284

Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GCG|GTAAGGCAG

5'SS Class:
major

3'SS Sequence:
CTCCCCCTTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CCCTGAG

U12 Branch Point Sequence:
CAGCCCTGAGCC

Flanking Amino Acid:
SRCRNEWYCTRVCQVQHWQK

Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.1
0.66
1.1
60.8
45.3

Major BPS
47
-0.1
1.5
42.6
40.4

Major PPT
79
0.65
0.7
72.5
25.6

Minor 5ss
30.6
-2.2
3.3
39.3
46

Minor BPS
47.8
-0.1
1.7
54.25
43.1

Associated Gene:

Gene:
ZMYND10

Ensembl Gene ID:

Chromosome:
PEDO01002774.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1800 - 10698
8899