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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002774.1_5902_7890_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5902 - 7890
Intron Length:
1989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TGCCCCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGAAAT
U12 Branch Point Sequence:
GGGGCCTGAAAT
Flanking Amino Acid:
KDLVSLSSMQELQEQAEAME
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
54.8
0.12
1.3
62.7
40.5
Major PPT
71.3
0.48
0.8
65.1
30.5
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
49.8
0.07
1.7
64.07
45.3

Associated Gene:

Gene:
ZMYND10
Ensembl Gene ID:
ENSAPLG00000015207
Chromosome:
PEDO01002774.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015874
1800 - 10698
8899