Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002778.1_1948_2056_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1948 - 2056

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGGCGG

5'SS Class:

major

3'SS Sequence:

CCTCGCTGCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTGAC

U12 Branch Point Sequence:

GCTGTCTGACCC

Flanking Amino Acid:

GQTGIIRSVTGGMCSVYLKD

Intron Amino Acid Position:

833

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

51.7

46.6

Major BPS

63.7

0.34

1.2

41.8

Major PPT

66.2

0.36

0.9

60.3

35.3

Minor 5ss

25.2

-2.9

3.1

30.3

42.8

Minor BPS

46.6

-0.2

1.8

43.3

Associated Gene:

Gene:

SUPT5H

Ensembl Gene ID:

ENSAPLG00000005365

Chromosome:

PEDO01002778.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005552

1196 - 8796

7601