Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002778.1_3776_3890_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3776 - 3890

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGGGCC

5'SS Class:

major

3'SS Sequence:

CCGCGCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAG

U12 Branch Point Sequence:

CCCTGCCCAGCC

Flanking Amino Acid:

TVRISQGPYKGYIGVVKDAT

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

65.5

34.2

Major BPS

43.3

-0.4

1.6

52.1

45.2

Major PPT

61.7

0.26

0.9

53.7

Minor 5ss

23.6

-3

3.5

32.2

42.8

Minor BPS

36.7

-1

2.2

42.63

44.5

Associated Gene:

Gene:

SUPT5H

Ensembl Gene ID:

ENSAPLG00000005365

Chromosome:

PEDO01002778.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005552

1196 - 8796

7601