Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002778.1_5598_5678_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5598 - 5678

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGCAAG

5'SS Class:

major

3'SS Sequence:

CTCAACTTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAA

U12 Branch Point Sequence:

GGTCCCTCAACT

Flanking Amino Acid:

IDLEVVTESTGKEREHNFQP

Intron Amino Acid Position:

242

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

43.5

Major BPS

60.8

0.27

1.1

63.2

34.1

Major PPT

70.5

0.46

0.9

39.7

Minor 5ss

37.7

-1.4

3.1

47.9

47.8

Minor BPS

67.2

0.62

1.6

80.22

40.7

Associated Gene:

Gene:

SUPT5H

Ensembl Gene ID:

ENSAPLG00000005365

Chromosome:

PEDO01002778.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005552

1196 - 8796

7601