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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002778.1_6846_6942_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6846 - 6942
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCGCT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TGACCCTAAAGC
Flanking Amino Acid:
DPNLWTVKCKIGEERATAIA
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.8
39.5
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
37.6
-1.4
3.6
56.2
48.2
Minor BPS
49.5
-0
2
61.6
43.2

Associated Gene:

Gene:
SUPT5H
Ensembl Gene ID:
ENSAPLG00000005365
Chromosome:
PEDO01002778.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005552
1196 - 8796
7601