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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002778.1_6974_7116_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6974 - 7116
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCATT
5'SS Class:
major
3'SS Sequence:
TGCCCCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
CGCCCTATAACG
Flanking Amino Acid:
ITQQQLLPGVKDPNLWTVKC
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
80.7
33.7
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
70.7
0.47
1
64.8
36.4
Minor 5ss
41.6
-0.9
3.1
58
40.7
Minor BPS
48.2
-0.2
1.7
50.24
43.7

Associated Gene:

Gene:
SUPT5H
Ensembl Gene ID:
ENSAPLG00000005365
Chromosome:
PEDO01002778.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005552
1196 - 8796
7601