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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002778.1_7515_8205_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7515 - 8205
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCCGAC
U12 Branch Point Sequence:
CGGGCCCGACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
41.5
-0.5
1.3
31.7
34.4
Major PPT
81.3
0.7
0.7
76.4
25.7
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
39.4
-0.8
2
44.32
43.4

Associated Gene:

Gene:
SUPT5H
Ensembl Gene ID:
ENSAPLG00000005365
Chromosome:
PEDO01002778.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005552
1196 - 8796
7601