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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002781.1_121_963_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
121 - 963
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCACGGGAC
5'SS Class:
major
3'SS Sequence:
TATCGGGGCCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
GGAGCTTTATCG
Flanking Amino Acid:
VEQETHHQVRQGCGWC
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.53
1.2
65.2
40.7
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
47.9
-0.1
1.2
40.6
42.8
Minor 5ss
17.7
-3.7
4.1
22.5
38
Minor BPS
48
-0.2
1.8
49.54
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021303
Chromosome:
PEDO01002781.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036898
103 - 2100
1998