About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002789.1_164_4264_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
164 - 4264
Intron Length:
4101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTCTCCTTACGT
Flanking Amino Acid:
DHTDLAIEYEVSAVPTVLAM
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
73.9
0.54
0.8
65.2
36.3
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
58.1
0.33
2
75.03
47.8

Associated Gene:

Gene:
TXN2
Ensembl Gene ID:
ENSAPLG00000027847
Chromosome:
PEDO01002789.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024171
21 - 4878
4858