Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002793.1_344_612_R

Intron Information:

Intron Rank:

146426

Intron Class:

major

Intron Phase:

Intron Coordinates:

344 - 612

Intron Length:

269

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGTAGA

5'SS Class:

major

3'SS Sequence:

GTTTGTTTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TTCTTCTGAAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

68.9

43.8

Major BPS

82.1

0.8

71.6

36.4

Major PPT

74.5

0.55

1.1

74.5

39.3

Minor 5ss

33.3

-1.9

2.9

33.2

41.9

Minor BPS

62.2

0.46

1.8

80.07

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026123

Chromosome:

PEDO01002793.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026560

21 - 1417

1397

ENSAPLT00000025294

21 - 937

917