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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002796.1_569_719_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
569 - 719
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CCACTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
CCGTCCCCAGCT
Flanking Amino Acid:
RKVKKKGEWKVLVVDQLSMR
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
66.4
0.37
0.9
57
38.5
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
44.6
-0.3
2.1
60.72
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020289
Chromosome:
PEDO01002796.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026171
215 - 764
550