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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002815.1_2404_2493_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2404 - 2493
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCATCATT
5'SS Class:
weak_major
3'SS Sequence:
GGCCCCTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTCCAC
U12 Branch Point Sequence:
GTGGCGTCCACC
Flanking Amino Acid:
LMVALFFAGLIFNGLQTVRT
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.1
0.24
1.3
67.3
43.6
Major BPS
46
-0.2
1.3
53.5
42
Major PPT
68.5
0.42
0.9
57.8
38.5
Minor 5ss
40.9
-1
3
55.6
42.7
Minor BPS
39.5
-0.8
2.5
50.79
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013770
Chromosome:
PEDO01002815.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025441
449 - 3362
2914