Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002815.1_3134_3899_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3134 - 3899

Intron Length:

766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGAAGG

5'SS Class:

major

3'SS Sequence:

CCCGCCGAAGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGAAGAT

U12 Branch Point Sequence:

AGCCCCAGGACA

Flanking Amino Acid:

LPDTIEEVESSPEGPGWGRR

Intron Amino Acid Position:

428

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

62.5

43.9

Major BPS

47.4

-0.1

1.2

40.8

39.7

Major PPT

42.4

-0.4

1.6

39.1

32.7

Minor 5ss

-2.8

30.8

42.8

Minor BPS

45.3

-0.3

1.7

53.25

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013770

Chromosome:

PEDO01002815.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014360

95 - 3969

3875