Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002849.1_1429_1993_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1429 - 1993

Intron Length:

565

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

TTGGATTTGGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

TTTTACTTACAA

Flanking Amino Acid:

DTSQWPLLLKNFDKLNVMTA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

67.8

43.5

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

65.3

0.35

1.1

62.1

44.1

Minor 5ss

28.6

-2.5

3.5

37.8

47.1

Minor BPS

61.3

0.35

1.9

77.86

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027813

Chromosome:

PEDO01002849.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027951

118 - 2243

2126