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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002849.1_779_1336_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
779 - 1336
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CGTTGTGCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TAGCCCTTAATC
Flanking Amino Acid:
PLKREISEYVRSGFINLDKP
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
63.9
0.31
0.9
57.8
38.5
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
73.4
0.71
1.2
73.25
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027813
Chromosome:
PEDO01002849.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027951
118 - 2243
2126