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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002854.1_816_1664_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
816 - 1664
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTGTTTTAATC
Flanking Amino Acid:
RRMTRNVTGQDMNRGGTLAD
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.7
0.65
0.7
77.2
24.9
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
65.3
0.46
1.3
69.9
36.2

Associated Gene:

Gene:
TMEM199
Ensembl Gene ID:
ENSAPLG00000013900
Chromosome:
PEDO01002854.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014491
21 - 2430
2410