About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002873.1_14773_14849_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14773 - 14849
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
CCTTTTCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TGGGCACTGACT
Flanking Amino Acid:
VDLKETNIDSAGAVQLPNGN
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
73.2
37.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
82.3
0.73
0.7
80.6
24.7
Minor 5ss
36.7
-1.5
2.9
47
42.5
Minor BPS
46.3
-0.2
2
66.02
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005253
Chromosome:
PEDO01002873.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047690
8064 - 22124
14061
ENSAPLT00000038092
8064 - 22124
14061
ENSAPLT00000005449
8064 - 19824
11761
ENSAPLT00000004909
8064 - 21661
13598