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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002873.1_15415_15518_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15415 - 15518
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGGA
5'SS Class:
major
3'SS Sequence:
CTTCCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
TGCCAGCTAAGG
Flanking Amino Acid:
GSFAHGGNDVSNAIGPLVAL
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.4
39.5
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
85.9
0.81
0.7
80.4
24.8
Minor 5ss
27.5
-2.6
2.9
32.7
42
Minor BPS
34.6
-1.3
2.4
39.18
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005253
Chromosome:
PEDO01002873.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004909
8064 - 21661
13598
ENSAPLT00000047690
8064 - 22124
14061
ENSAPLT00000038092
8064 - 22124
14061
ENSAPLT00000005449
8064 - 19824
11761