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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002873.1_18426_18557_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18426 - 18557
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTCCCCACACCC
Flanking Amino Acid:
VCAHGFRFLKGAEILHYYPN
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
33.5
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
66.8
0.38
0.8
57.1
33.4
Minor 5ss
37
-1.5
2.9
42.4
44.3
Minor BPS
42.7
-0.5
2
53.05
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005253
Chromosome:
PEDO01002873.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038092
8064 - 22124
14061
ENSAPLT00000005449
8064 - 19824
11761
ENSAPLT00000004909
8064 - 21661
13598
ENSAPLT00000047690
8064 - 22124
14061