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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002873.1_18650_18729_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18650 - 18729
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TTGCCCCCACTC
Flanking Amino Acid:
HILNTLFNLTETYLYACLVD
Intron Amino Acid Position:
758

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
64.9
0.37
1
67
29.8
Major PPT
76.9
0.6
0.9
73.3
31.6
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
43.6
-0.5
2
56.82
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005253
Chromosome:
PEDO01002873.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038092
8064 - 22124
14061
ENSAPLT00000005449
8064 - 19824
11761
ENSAPLT00000004909
8064 - 21661
13598
ENSAPLT00000047690
8064 - 22124
14061