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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002873.1_21078_21163_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21078 - 21163
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACCCCC
5'SS Class:
major
3'SS Sequence:
GCCGTGCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGACCAT
U12 Branch Point Sequence:
GTGCCCTGACCA
Flanking Amino Acid:
DISSIKRRIQKVTHEMDMCY
Intron Amino Acid Position:
1022

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
56.7
42.7
Major BPS
50.4
0.01
1.4
60.8
45.4
Major PPT
61.6
0.26
0.9
53.5
36.7
Minor 5ss
39.2
-1.2
3
51.7
45
Minor BPS
50.6
0.02
1.8
62.79
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005253
Chromosome:
PEDO01002873.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004909
8064 - 21661
13598
ENSAPLT00000047690
8064 - 22124
14061
ENSAPLT00000038092
8064 - 22124
14061