Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002873.1_25053_25532_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25053 - 25532

Intron Length:

480

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTCGC

5'SS Class:

strong_major

3'SS Sequence:

GGTCCCTCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTAAC

U12 Branch Point Sequence:

GGTCCCTCAACA

Flanking Amino Acid:

VPKTPTAEDRRRQLEQWLAS

Intron Amino Acid Position:

214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.8

72.2

39.5

Major BPS

59.3

0.23

1.3

61.4

43.2

Major PPT

65.2

0.34

58.6

37.1

Minor 5ss

29.1

-2.4

2.8

35.6

Minor BPS

64.6

0.45

1.6

71.58

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023569

Chromosome:

PEDO01002873.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029164

21822 - 26587

4766