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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002873.1_8946_9030_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8946 - 9030
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGGTTCTAATCA
Flanking Amino Acid:
GVKWSELLKIVLSWFISPLL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.9
0.67
0.7
73.3
31.6
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
49.7
-0
1.9
63.19
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005253
Chromosome:
PEDO01002873.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004909
8064 - 21661
13598
ENSAPLT00000047690
8064 - 22124
14061
ENSAPLT00000038092
8064 - 22124
14061
ENSAPLT00000005449
8064 - 19824
11761