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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002873.1_9117_11071_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9117 - 11071
Intron Length:
1955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCGAC
U12 Branch Point Sequence:
AGCTCCCGACCT
Flanking Amino Acid:
FLVRRFILHKADPVPNGLRA
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
48.5
-0
1.3
46
38.7
Major PPT
82.5
0.73
0.8
76.3
32.3
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
46.1
-0.2
2
65.01
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005253
Chromosome:
PEDO01002873.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038092
8064 - 22124
14061
ENSAPLT00000005449
8064 - 19824
11761
ENSAPLT00000004909
8064 - 21661
13598
ENSAPLT00000047690
8064 - 22124
14061