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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002884.1_599_1556_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
599 - 1556
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCCC
5'SS Class:
major
3'SS Sequence:
TAATTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
GATTAATTAACC
Flanking Amino Acid:
VGAAAGGDFQVLLPTAAFLT
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
60.6
44.5
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
69.3
0.43
0.9
62.7
39.1
Minor 5ss
44.7
-0.6
2.9
60.8
43.7
Minor BPS
60.7
0.32
1.8
71.38
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029422
Chromosome:
PEDO01002884.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030990
21 - 1751
1731