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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002892.1_492_1055_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
492 - 1055
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGTGG
5'SS Class:
major
3'SS Sequence:
GCTTTACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
ATTGCTTTACTT
Flanking Amino Acid:
RSRESRRLEKIKDSPIEWKE
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.1
54.1
45.4
Major BPS
62
0.3
1
53
34.1
Major PPT
80.5
0.69
0.9
73.8
35.8
Minor 5ss
34.8
-1.7
3.5
46.9
48.5
Minor BPS
60.8
0.42
1.7
77.48
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030305
Chromosome:
PEDO01002892.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035885
21 - 1929
1909