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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002906.1_1651_2335_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1651 - 2335
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GGGTCCTGACGT
Flanking Amino Acid:
ETGLNMRVIQVWFQNRRSKE
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
63.6
0.31
0.8
56.5
27.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
46.5
-0.1
2
62.34
47

Associated Gene:

Gene:
LHX5
Ensembl Gene ID:
ENSAPLG00000020701
Chromosome:
PEDO01002906.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023006
42 - 2741
2700