About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002935.1_249_1916_R

Intron Information:

Intron Rank:
136999
Intron Class:
major
Intron Phase:
Intron Coordinates:
249 - 1916
Intron Length:
1668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TTCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
59.5
39.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
74.4
0.55
0.7
65.8
30.3
Minor 5ss
35.4
-1.7
3
43.7
37.6
Minor BPS
95.9
1.52
0.5
104
16.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021199
Chromosome:
PEDO01002935.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037056
21 - 4747
4727
ENSAPLT00000033429
21 - 4747
4727