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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002936.1_1377_1516_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1377 - 1516
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAA
U12 Branch Point Sequence:
CCCCCCCTGAGT
Flanking Amino Acid:
PPKPGLAIFQPPGGALPQPA
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
57.5
0.19
1.4
61.7
43.1
Major PPT
73.5
0.53
0.9
66.1
35.8
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
44.8
-0.3
2
56.99
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024663
Chromosome:
PEDO01002936.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046061
21 - 1897
1877