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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002938.1_666_771_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
666 - 771
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-CG
5'SS Sequence:
GAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCATGGCCCCCG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCCCCCCCATG
Flanking Amino Acid:
WVNELQNCEEGCRIYLCGTK
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
36
-0.8
3.1
41.2
38.2
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
36
-1.2
2
33.01
41

Associated Gene:

Gene:
RAB24
Ensembl Gene ID:
ENSAPLG00000024021
Chromosome:
PEDO01002938.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039855
21 - 985
965
ENSAPLT00000034798
21 - 985
965
ENSAPLT00000032552
21 - 985
965