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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002948.1_5580_6651_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5580 - 6651
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AAATCTTAAATT
Flanking Amino Acid:
IRYLQEQARKVLEEANRDAD
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
83.4
0.75
0.8
81.7
35.4
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
60
0.39
1.6
72.19
39

Associated Gene:

Gene:
C1orf50
Ensembl Gene ID:
ENSAPLG00000004216
Chromosome:
PEDO01002948.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004319
3511 - 7491
3981