About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002956.1_221_1184_F

Intron Information:

Intron Rank:
135650
Intron Class:
major
Intron Phase:
Intron Coordinates:
221 - 1184
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCGTGAT
U12 Branch Point Sequence:
TGGACCTGAGCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
56.3
0.16
1.3
48.7
45.1
Major PPT
83.8
0.76
0.7
76.7
32
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
49.8
-0
1.8
61.36
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023007
Chromosome:
PEDO01002956.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039669
21 - 1484
1464
ENSAPLT00000035942
21 - 1484
1464